Shin-ichiro Agake, Ph. D. - Visiting Scientist

Shin-ichiro Agake

CONTACT INFORMATION

Bond Life Science Center

University of Missouri-Columbia

1201 Rollins St

Columbia, MO 65201-4231

Email: sagfk@missouri.edu

Phone (Lab): (573) 884-4799

 

EDUCATION

  • Ph.D. (Agriculture). Department of Biological Production Science, United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology (TUAT), Tokyo – Japan (Apr. 2019 – Mar. 2022).
  • Master (Agriculture). Department of Biological Production Science, Master course at Graduate School, Tokyo University of Agriculture and Technology (TUAT), Tokyo – Japan (Apr. 2017 – Mar. 2019).
  • Bachelor (Engineer). Applied Chemistry, Advanced Course at National Institute of Technology, Ibaraki College, Ibaraki – Japan (Apr. 2015 – Mar. 2017).
  • Associate Degree (Engineer). Department of Chemistry and Material Engineering Course, National Institute of Technology, Ibaraki College, Ibaraki – Japan (Apr. 2010 – Mar. 2015).

PROFESSIONAL EXPERIENCE

  • Assistant Professor, Institute of Global Innovation Research, Tokyo University of Agriculture and Technology (Apr. 2022 – Present).
  • Doctoral Program for World-leading Innovative & Smart Education (WISE) program, Tokyo University of Agriculture and Technology (Apr. 2019 – Mar. 2022).

RELEVANT EXPERIENCE

  • Doctoral Program for World-leading Innovative & Smart Education (WISE) program, Tokyo University of Agriculture and Technology (Apr. 2019 – Mar. 2022). http://www.wise.tuat.ac.jp/en/
  • Exchange student to INSA de Rouen, Rouen – France (Mar. 2016). https://www.insa-rouen.fr/
  • Internship at Chosun College of Science and Technology, Gwangju – Korea (Aug. – Sep. 2015). http://www.cst.ac.kr/intro.php

CURRENT RESEARCH FOCUS

  • Plant-microbe Interaction, Plant Growth Promoting Rhizobacteria (PGPR).

PUBLICATION

  1. Aoudi Y.†, Agake S.*,†, Habibi S., Stacey G., Yasuda M.*, Ohkama-Ohtsu N., Effect of Bacterial Extracellular Polymeric Substances from Enterobacter spp. on Rice Growth under Abiotic Stress and Transcriptomic Analysis, Microorganisms, 12(6), 1212, 2024. * Authors to whom correspondence should be addressed. † These authors contributed equally to this work.
  2. Yue Z., Yuan K., Seki M., Agake S., Matsumura K., Okita N., Naoi W., Naoi K., Toyota K., Tanaka H., Sugihara S., Yasuda M., Ohkama-Ohtsu N., Comparative Analysis of Japanese Soils: Exploring Power Generation Capability in Relation to Bacterial Communities, Sustainability, 16(11), 4625, 2024.
  3. Miyaji S., Ito T., Kitaiwa T., Nishizono K., Agake S., Harata H., Aoyama H., Umahashi M., Sato M., Inaba J., Fushinobu S., Yokoyama T., Maruyama-Nakashita A., Yokota Hirai M., Ohkama-Ohtsu N., N2-Acetylornithine deacetylase functions as a Cys-Gly dipeptidase in the cytosolic glutathione degradation pathway in Arabidopsis thaliana, The Plant Journal, 118(5) 2024.
  4. Islam M.M.†, Agake S.†, Ito T., Habibi S., Yasuda M., Yamada T., Stacey G., Ohkama-Ohtsu N., Involvement of Peptidoglycan Receptor Proteins in Mediating the Growth-Promoting Effects of Bacillus pumilus TUAT1 in Arabidopsis thaliana, Plant And Cell Physiology, 65(5), 748-761, 2024. † These authors contributed equally to this work.
  5. Borjigin T., Ohkama-Ohtsu N., Agake S., Ngo N.P., Maeda M., Yokoyama T., Umezawa T., Yamada T., Effects of Plant Growth-Promoting Rhizobacteria Bacillus pumilus TUAT1 Strain Inoculation on Arabidopsis thaliana Seedling Growth, Asian Journal of Plant Sciences, 23(1), 35-45, 2024.
  6. Xiao L.E., Yamada T., Maeda M., Agake S., Ngo N.P., Kanekatsu M., Shinozaki Y., Ohkama-Ohtsu N., Yokoyama T., Possible involvement of nitric oxide in promoting the initial growth of rice seedlings at low temperature by inoculation of Bacillus pumilus strain TUAT1 spores, Soil Science and Plant Nutrition, 69(5-6), 2023.
  7. Damo J.L.C., Shimizu T., Sugiura H., Yamamoto S., Agake S., Anarna J., Tanaka H., Sugihara S., Okazaki S., Yokoyama T., Yasuda M., Ohkama-Ohtsu N., The Application of Sulfur Influences Microbiome of Soybean Rhizosphere and Nutrient-Mobilizing Bacteria in Andosol, Microorganisms, 11(5), 1193, 2023.
  8. Artigas Ramírez M.D., Agake S., Maeda M., Kojima K., Ohkama-Ohtsu N., Yokoyama T., Diversity of Fast-Growth Spore-Forming Microbes and Their Activity as Plant Partners, Microorganisms, 11(2), 232, 2023.
  9. Mortuza M.F., Djedidi S., Ito T., Agake S., Sekimoto H., Yokoyama T., Okazaki S., Ohkama-Ohtsu N., Genetic and Physiological Characterization of Soybean-Nodule-Derived Isolates from Bangladeshi Soils Revealed Diverse Array of Bacteria with Potential Bradyrhizobia for Biofertilizers, Microorganisms, 10(11), 2282, 2022.
  10. Agake S., Ohwaki Y., Kojima K., Yoshikawa E., Artigas Ramirez M.D., Bellingrath-Kimura S.D., Yamada T., Ookawa T., Ohkama-Ohtsu N., Yokoyama T., Biofertilizer with Bacillus pumilus TUAT1 Spores Improves Growth, Productivity, and Lodging Resistance in Forage Rice, Agronomy, 12(10), 2325, 2022.
  11. Ito T., Kitaiwa T., Nishizono K., Umahashi M., Miyaji S., Agake S., Kuwahara K., Yokoyama T., Fushinobu S., Maruyama-Nakashita A., Sugiyama R., Sato M., Inaba J., Yokota Hirai M., Ohkama-Ohtsu N., Glutathione degradation activity of gamma-glutamyl peptidase 1 manifests its dual roles in primary and secondary sulfur metabolism in Arabidopsis, The Plant Journal, 111(6), 1626-1642, 2022.
  12. Sugiura H., Miyaji S., Yamamoto S., Yasuda M., Damo J.L.C., Artigas Ramirez M.D., Agake S., Kamiya T., Fujiwara T., Bellingrath-Kimura S.D., Tanaka H., Sugihara S., Ohkama-Ohtsu N., Induction of citrate transporter gene expression in soybean roots by sulfur application, Soil Science and Plant Nutrition, 68(5-6), 2022.
  13. Damo J.L.C., Artigas Ramirez M.D., Agake S., Pedro M., Brown M., Sekimoto H., Yokoyama T., Sugihara S., Okazaki S., Ohkama-Ohtsu N., Isolation and Characterization of Phosphate Solubilizing Bacteria from Paddy Field Soils in Japan, Microbes and Environments, 37(2), ME21085, 2022.
  14. Agake S., Plucani do Amaral F., Yamada T., Sekimoto H., Stacey G., Yokoyama T., Ohkama-Ohtsu N., Plant Growth-promoting Effects of Viable and Dead Spores of Bacillus pumilus TUAT1 on Setaria viridis, Microbes and Environments, 37(1), ME21060, 2022.
  15. Uda S., Fukuhara I., Artigas Ramirez M.D., Kojima K., Djedidi S., Agake S., Kaga A., Matsunami H., Moriyama H., Yamada T., Yokoyama T., Ohkama-Ohtsu N., Identification and analysis of genes causing varietal differences of cesium accumulation in soybean, Soil Science and Plant Nutrition, 67(6), 670-680, 2021.
  16. Hasibuan R.F.M., Miyatake M., Sugiura H., Agake S., Yokoyama T., Bellingrath-Kimura S.D., Katsura K., Ohkama-Ohtsu N., Application of biofertilizer containing Bacillus pumillus TUAT1 on soybean without inhibiting infection by Bradyrhizobium diazoefficiens USDA110, Soil Science and Plant Nutrition, 67(5), 535-539, 2021.
  17. Agake S., Artigas Ramirez M.D., Kojima K., Ookawa T., Ohkama-Ohtsu N., Yokoyama T., Seed coating by biofertilizer containing spores of Bacillus pumilus TUAT1 strain enhanced initial growth of Oryza sativa, Agronomy Journal, 113(4), 3708-3717, 2021.
  18. Agake S., Komatsuzaki H., Satoh M., Agou T., Tanaka Y., Akita M., Nakazawa J., Hikichi S., A monomeric manganese(II) catecholato complex: Synthesis, crystal structure, and reactivity toward molecular oxygen, Inorganica Chimica Acta, 484, 424-429, 2019.